Installation and Dependencies¶
Installation¶
To get the lastest published version, install using pip:
pip install gpvolve
To install from source, clone this repo and install using pip:
User can clone the github repository and install it locally.
git clone https://github.com/harmslab/gpvolve
cd gpvolve
pip install -e .
Dependencies¶
The following dependencies are required for the gpvolve
package.
- gpmap: Module for constructing powerful genotype-phenotype map python data-structures.
- gpgraph_: Module for graphic representation of genotype-phenotype maps built on top of networkx.
- networkx: Python package for construction and analysis of networks and graphs.
- msmtools: Python package containing tools for construction and analysis of markov models, including Transition Path Theory and PCCA+.
- numpy: Python’s array manipulation package.
- cython: Programming language written in Python with C-like performance.
- matplotlib: Python plotting library.